PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G271700.1.p
Common NamePRUPE_ppa016030mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 95aa    MW: 10737 Da    PI: 8.5213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G271700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-0822611554
                        HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +i +  ++L++llP+ + + +s K+s + +L+++++YI++L
  Prupe.1G271700.1.p 22 QITDLVSKLQQLLPEiR-NRRSDKVSASKVLQETCNYIRNL 61
                        7889999********77.89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.178761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-92179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-52261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-82275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSSRRSSRSR QSGTSRNISD EQITDLVSKL QQLLPEIRNR RSDKVSASKV LQETCNYIRN  60
LHREVDDLSD RLSELLASTD MDSDQAAIIR SLLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221650.13e-59PREDICTED: transcription factor PRE6-like
RefseqXP_008221651.13e-59PREDICTED: transcription factor PRE6-like
SwissprotQ8GW323e-39PRE6_ARATH; Transcription factor PRE6
TrEMBLM5XQD98e-57M5XQD9_PRUPE; Uncharacterized protein
STRINGVIT_01s0026g02030.t017e-45(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-40bHLH family protein